2016
Mahoney JM, Titiz AS, Hernan AE, Scott RC. Short-Range Temporal Interactions in Sleep; Hippocampal Spike Avalanches Support a Large Milieu of Sequential Activity Including Replay. PloS one. 2016; 11(2):e0147708.
2015
Buckley AW, Scott R, Tyler A, Mahoney JM, Thurm A, Farmer C, Swedo S, Burroughs SA, Holmes GL. State-Dependent Differences in Functional Connectivity in Young Children With Autism Spectrum Disorder. EBioMedicine. 2015; 2(12):1905-15
Brooks L 3rd, Lyons SM, Mahoney JM, Welch JD, Liu Z, Marzluff WF, Whitfield ML. A multiprotein occupancy map of the mRNP on the 3′ end of histone mRNAs. RNA (New York, N.Y.). 2015; 21(11):1943-65.
Taroni JN, Martyanov V, Huang CC, Mahoney JM, Hirano I, Shetuni B, Yang GY, Brenner D, Jung B, Wood TA, Bhattacharyya S, Almagor O, Lee J, Sirajuddin A, Varga J, Chang RW, Whitfield ML, Hinchcliff M. Molecular characterization of systemic sclerosis esophageal pathology identifies inflammatory and proliferative signatures. Arthritis research & therapy. 2015; 17:194.
Johnson ME, Mahoney JM, Taroni J, Sargent JL, Marmarelis E, Wu MR, Varga J, Hinchcliff ME, Whitfield ML. Experimentally-derived fibroblast gene signatures identify molecular pathways associated with distinct subsets of systemic sclerosis patients in three independent cohorts. PloS one. 2015; 10(1):e0114017.
Mahoney JM, Taroni J, Martyanov V, Wood TA, Greene CS, Pioli PA, Hinchcliff ME, Whitfield ML. Systems level analysis of systemic sclerosis shows a network of immune and profibrotic pathways connected with genetic polymorphisms. PLoS computational biology. 2015; 11(1):e1004005.
Barnett AH, Nelson BJ, Mahoney JM. High-order boundary integral equation solution of high frequency wave scattering from obstacles in an unbounded linearly stratified medium. Journal of Computational Physics. 2015 Sep 15;297:407-26.
2014
Titiz AS, Mahoney JM, Testorf ME, Holmes GL, Scott RC. Cognitive impairment in temporal lobe epilepsy: role of online and offline processing of single cell information. Hippocampus. 2014; 24(9):1129-45.
2013
Grant GD, Brooks L 3rd, Zhang X, Mahoney JM, Martyanov V, Wood TA, Sherlock G, Cheng C, Whitfield ML. Identification of cell cycle-regulated genes periodically expressed in U2OS cells and their regulation by FOXM1 and E2F transcription factors. Molecular biology of the cell. 2013; 24(23):3634-50.
Hinchcliff M, Huang CC, Wood TA, Mahoney JM, Martyanov V, Bhattacharyya S, Tamaki Z, Lee J, Carns M, Podlusky S, Sirajuddin A, Shah SJ, Chang RW, Lafyatis R, Varga J, Whitfield ML. Molecular signatures in skin associated with clinical improvement during mycophenolate treatment in systemic sclerosis. The Journal of investigative dermatology. 2013; 133(8):1979-89.
2012
Tyler AL, Mahoney JM, Richard GR, Holmes GL, Lenck-Santini PP, Scott RC. Functional network changes in hippocampal CA1 after status epilepticus predict spatial memory deficits in rats. The Journal of neuroscience : the official journal of the Society for Neuroscience. 2012; 32(33):11365-76.
Grant GD, Gamsby J, Martyanov V, Brooks L 3rd, George LK, Mahoney JM, Loros JJ, Dunlap JC, Whitfield ML. Live-cell monitoring of periodic gene expression in synchronous human cells identifies Forkhead genes involved in cell cycle control. Molecular biology of the cell. 2012; 23(16):3079-93.
Pendergrass SA, Lemaire R, Francis IP, Mahoney JM, Lafyatis R, Whitfield ML. Intrinsic gene expression subsets of diffuse cutaneous systemic sclerosis are stable in serial skin biopsies. The Journal of investigative dermatology. 2012; 132(5):1363-73.
2011
Allen JA, Peterson A, Sufit R, Hinchcliff ME, Mahoney JM, Wood TA, Miller FW, Whitfield ML, Varga J. Post-epidemic eosinophilia-myalgia syndrome associated with L-tryptophan. Arthritis and rheumatism. 2011; 63(11):3633-9.
2005
Wang LB, You G, Barraca KR, Waller K, Mahoney JM, Young JL, Kwon C. Investigation of current percolation characteristics in coated conductors. IEEE transactions on applied superconductivity. 2005 Jun;15(2):3676-9.